PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5129_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 461aa    MW: 50124.4 Da    PI: 6.6791
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5129_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.38.4e-063523901154
                 HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  R +++ ++++ L++l+ +      +K + a++L +A+eYIk L
  RrC5129_p2 352 VRKEKMGDRIAALQQLVSPF-----GKTDAASVLSEAIEYIKFL 390
                 5778999***********98.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.735341390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0075347396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-11351404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.14E-6351395No hitNo description
Gene3DG3DSA:4.10.280.101.1E-9355399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MGDHHDFINS GSWWKVSSSS SISSSSSMRA NSNESGGSAV FHDKLHHEDH HSLATEHHLQ  60
MIGLGLSSQS PVDQWNQSLL RGDSKAETSF GVMLQENLNL DANSKANANT TSSTTSYQLQ  120
ESDSSHNQAL WRDPHINNND FKPQLNMTSS NRGFFSDHHQ FSPHGSSSTD SSTVTCQGFS  180
IDNSTNTMYG TSTTPNSSSA MFHQHQGAGY SLPGSSDQQP SRNHQQSNLG YSQFGSSTGN  240
YEQIATALPS TWFLRSSPPK PHSPLRFSNN ATFWNPAATV GNLGPTQHDA SSNFFPALQP  300
PQIHQPSFDE QTKSISEVRD SSSGEVKRGG GDQPAAKKAK SEAASPSPAF KVRKEKMGDR  360
IAALQQLVSP FGKTDAASVL SEAIEYIKFL HQQVSALSNP YMKSGASLHH QQSDHPKEPD  420
VSEEPDLRSR GLCLVPVSST FPVTHDTAVD FWTPTFGGTF R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180540.0AK118054.1 Arabidopsis thaliana At3g20640 mRNA for putative bHLH transcription factor (bHLH123), complete cds, clone: RAFL19-30-D14.
GenBankBT0085800.0BT008580.1 Arabidopsis thaliana clone U50947 unknown protein (At3g20640) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145606.10.0PREDICTED: transcription factor bHLH123 isoform X2
SwissprotQ8GXT30.0BH123_ARATH; Transcription factor bHLH123
TrEMBLM4F3W10.0M4F3W1_BRARP; Uncharacterized protein
STRINGBra035761.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40242553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.10.0bHLH family protein